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Food allergy vs food intolerance: how they're diagnosed and what the tests show

Guides 7 min read
Guides·Dr. Lina HaddadChief Medical Officer·July 25, 2026· 7 min read

Many people confuse food allergy with food intolerance — they are fundamentally different conditions with different mechanisms, different risks and different tests. Here's the clear guide to both.

The key differences

How food allergy is diagnosed

Diagnosis begins with a clinical history — symptom onset, timing relative to eating, severity and reproducibility. The most common diagnostic tests are skin prick tests (SPT) and specific IgE blood tests (previously called RAST or ImmunoCAP). A positive result means sensitisation — the immune system has produced IgE antibodies — but not necessarily clinical allergy. Many sensitised individuals tolerate the food in practice.

The gold-standard test for food allergy is an oral food challenge (OFC) — eating the food under controlled medical supervision. This is performed after initial testing when the results are ambiguous, or to assess whether a child has outgrown a diagnosed allergy.

Common food intolerances

Lactose intolerance — absence or reduction of the enzyme lactase — causes bloating, flatulence and diarrhoea after consuming dairy. It is confirmed by a hydrogen breath test or by lactase gene testing. Most people with lactose intolerance can tolerate small amounts (around 12 g of lactose — one glass of milk) without symptoms.

Non-coeliac gluten sensitivity (NCGS) is a diagnosis of exclusion: coeliac disease (autoimmune, confirmed by duodenal biopsy) and wheat allergy must both be ruled out first. A double-blind placebo-controlled food challenge is the only way to confirm NCGS, but is not routinely available.

The problem with self-diagnosis

Self-diagnosed food intolerances are common — studies suggest that while up to 20% of people believe they have a food allergy, clinical testing confirms it in only 2–4%. Unnecessary restriction of multiple foods can cause nutritional deficiencies, particularly in children, and significant lifestyle disruption without benefit.

Equally problematic: people who suspect only an intolerance when they have a genuine IgE-mediated allergy — and continue to consume small amounts of a food that could trigger anaphylaxis.